Describing High-order Statistical Dependence Using “concurrence Topology,” with Application to Functional Mri Brain Data

نویسندگان

  • STEVEN P. ELLIS
  • Steven P. Ellis
چکیده

In multivariate data analysis dependence beyond pair-wise can be important. With many variables, however, the number of simple summaries of even third-order dependence can be unmanageably large. “Concurrence topology” is an apparently new method for describing high-order dependence among up to dozens of dichotomous (i.e., binary) variables (e.g., seventh-order dependence in 32 variables). This method generally produces summaries of dependence of manageable size. (But computing time can be lengthy.) For time series, this method can be applied in both the time and Fourier domains. Write each observation as a vector of 0’s and 1’s. A “concurrence” is a group of variables all labeled “1” in the same observation. The collection of concurrences can be represented as a filtered simplicial complex. Holes in the filtration indicate relatively weak or negative association among the variables. The pattern of the holes in the filtration can be analyzed using persistent homology. We applied concurrence topology on binarized, resting-state, functional MRI data acquired from patients diagnosed with attention-deficit hyperactivity disorder and from healthy controls. An exploratory analysis finds a number of differences between patients and controls in the topologies of their filtrations, demonstrating that concurrence topology can find in data high-order structure of real-world relevance. This research is supported in part by United States PHS grants MH62185 and MH084029. Received May 22, 2013, revised October 25, 2013; published on May 27, 2014. 2010 Mathematics Subject Classification: 62H17, 92C55, 62M15.

برای دانلود رایگان متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Brain Single Photon Emission Computed Tomography Scan (SPECT) and Functional MRI in Systemic Lupus Erythematosus Patients with Cognitive Dysfunction: A Systematic Review

Objective(s): Systemic lupus erythematosus (SLE) is an autoimmune disease with a wide range of clinical manifestations. Cognitive dysfunction is one of the manifestations that could present prior to the emergence of any other neuropsychiatric involvements in SLE. Cognitive dysfunction is a subtle condition occurring with ahigh frequency. However, there is no data on the correlation of cognitive...

متن کامل

Abnormal and Brain Disease Prediction Using Conditional Random Fields

SWI Venography is used for new segmentation challenge.We present automatic segmentation of whole brain through CRF algorithm. We analyse interactive pattern for abnormal and disease prediction using CRF and statistical region. Functional MRI is a functional new image procedure using MRI technology that measure brain activity by detecting changes associated with flood flow. The CRF algorithm usi...

متن کامل

Concurrence Topology of Some Cancer Genomics Data

The topological data analysis method “concurrence topology” is applied to mutation frequencies in 69 genes in glioblastoma data. In dimension 1 some apparent “mutual exclusivity” is found. By simulation of data having approximately the same second order dependence structure as that found in the data, it appears that one triple of mutations, PTEN, RB1, TP53, exhibits mutual exclusivity that depe...

متن کامل

Integrating fMRI data into 3D conventional radiotherapy treatmentplanning of brain tumors

Introduction: This study was aimed to investigate the beneficial effects of functional magnetic resonance imaging (fMRI) data in treatment planning for patients with CNS tumors in order to decrease the injury of functional regions of the brain followed by increase in life quality and survival of patients. This study pursues a novel approach in planning for the treatment of brai...

متن کامل

Brain Activity Map Extraction from Multiple Sclerosis Patients Using Resting-State fMRI Data Based on Amplitude of Low Frequency Fluctuations and Regional Homogeneity Analysis

Introduction: Multiple Sclerosis (MS) is the most common non-traumatic neurological diseases of young adults. MS often reported during ages 20-62. MS affects the various anatomical parts of the central nervous system. Up to 65% of multiple sclerosis patients MS patients suffer from various problems, such as fatigue, depression, pain and sleep disorders. Unlike MRI, that only sh...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

عنوان ژورنال:

دوره   شماره 

صفحات  -

تاریخ انتشار 2014